Detailed information of SNP:
|
SNP ID:
sf0406521610(Gbrowse)
Chromosome: chr04 Position: 6521610 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 79.19% | 20.81% |
| All Indica | 795 | 74.84% | 25.16% |
| All Japonica | 495 | 94.55% | 5.45% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 211 | 61.14% | 38.86% |
| Indica Intermediate | 209 | 56.46% | 43.54% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406521610 | T->C | LOC_Os04g11900(LOC_Os04g11900.1) | Synonymous |