Detailed information of SNP:
|
SNP ID:
sf0406522327(Gbrowse)
Chromosome: chr04 Position: 6522327 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.72% | 39.28% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406522327 | C->T | INTERGENIC | None |