Detailed information of SNP:
|
SNP ID:
sf0406524683(Gbrowse)
Chromosome: chr04 Position: 6524683 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 92.90% | 7.10% |
| All Indica | 790 | 90.63% | 9.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 371 | 87.60% | 12.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406524683 | C->T | LOC_Os04g11910(LOC_Os04g11910.1) | INTRON |