Detailed information of SNP:
|
SNP ID:
sf0406528037(Gbrowse)
Chromosome: chr04 Position: 6528037 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 90.94% | 9.06% |
| All Indica | 795 | 88.05% | 11.95% |
| All Japonica | 495 | 94.95% | 5.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406528037 | G->A | LOC_Os04g11910(LOC_Os04g11910.1) | INTRON |