Detailed information of SNP:
|
SNP ID:
sf0406532698(Gbrowse)
Chromosome: chr04 Position: 6532698 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.69% | 21.31% |
| All Indica | 797 | 74.15% | 25.85% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 209 | 52.63% | 47.37% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406532698 | G->A | INTERGENIC | None |