Detailed information of SNP:
|
SNP ID:
sf0406557284(Gbrowse)
Chromosome: chr04 Position: 6557284 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 65.65% | 34.35% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 491 | 6.11% | 93.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 329 | 6.38% | 93.62% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406557284 | G->A | INTERGENIC | None |