Detailed information of SNP:
|
SNP ID:
sf0406557655(Gbrowse)
Chromosome: chr04 Position: 6557655 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.36% | 43.64% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406557655 | T->C | INTERGENIC | None |