Detailed information of SNP:
|
SNP ID:
sf0406557757(Gbrowse)
Chromosome: chr04 Position: 6557757 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 64.39% | 35.61% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 490 | 7.55% | 92.45% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 328 | 7.62% | 92.38% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406557757 | A->G | INTERGENIC | None |