Detailed information of SNP:
|
SNP ID:
sf0406563126(Gbrowse)
Chromosome: chr04 Position: 6563126 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 63.40% | 36.60% |
| All Indica | 796 | 92.96% | 7.04% |
| All Japonica | 451 | 4.66% | 95.34% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 304 | 3.95% | 96.05% |
| Tropical Japonica | 84 | 2.38% | 97.62% |
| Japonica Intermediate | 63 | 11.11% | 88.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406563126 | T->C | INTERGENIC | None |