Detailed information of SNP:
|
SNP ID:
sf0406574294(Gbrowse)
Chromosome: chr04 Position: 6574294 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.43% | 11.57% |
| All Indica | 797 | 88.83% | 11.17% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406574294 | C->T | LOC_Os04g11990(LOC_Os04g11990.1) | INTRON |