Detailed information of SNP:
|
SNP ID:
sf0406587830(Gbrowse)
Chromosome: chr04 Position: 6587830 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 54.56% | 45.44% |
| All Indica | 795 | 82.52% | 17.48% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406587830 | T->C | INTERGENIC | None |