Detailed information of SNP:



SNP ID: sf0406587830(Gbrowse)

Chromosome: chr04

Position: 6587830
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 54.56% 45.44%
All Indica795 82.52% 17.48%
All Japonica497 3.62% 96.38%
Aus67 98.51% 1.49%
Indica I375 92.27% 7.73%
Indica II211 86.73% 13.27%
Indica Intermediate209 60.77% 39.23%
Temperate Japonica335 2.99% 97.01%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 8.82% 91.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 42.86% 57.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0406587830 T->C INTERGENIC None