Detailed information of SNP:
|
SNP ID:
sf0406587875(Gbrowse)
Chromosome: chr04 Position: 6587875 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 56.29% | 43.71% |
| All Indica | 794 | 85.39% | 14.61% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406587875 | C->T | INTERGENIC | None |