Detailed information of SNP:
|
SNP ID:
sf0406615470(Gbrowse)
Chromosome: chr04 Position: 6615470 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 61.16% | 38.84% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406615470 | G->A | INTERGENIC | None |