Detailed information of SNP:
|
SNP ID:
sf0406616271(Gbrowse)
Chromosome: chr04 Position: 6616271 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 51.42% | 48.58% |
| All Indica | 792 | 81.19% | 18.81% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 88.74% | 11.26% |
| Indica II | 211 | 68.25% | 31.75% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406616271 | G->A | INTERGENIC | None |