Detailed information of SNP:
|
SNP ID:
sf0406627149(Gbrowse)
Chromosome: chr04 Position: 6627149 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 55.27% | 44.73% |
| All Indica | 793 | 84.74% | 15.26% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 210 | 70.48% | 29.52% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406627149 | C->T | INTERGENIC | None |