Detailed information of SNP:
|
SNP ID:
sf0406634794(Gbrowse)
Chromosome: chr04 Position: 6634794 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 71.46% | 28.54% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406634794 | T->C | INTERGENIC | None |