Detailed information of SNP:
|
SNP ID:
sf0406650802(Gbrowse)
Chromosome: chr04 Position: 6650802 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 96.21% | 3.79% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 451 | 88.69% | 11.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 84.54% | 15.46% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406650802 | C->T | LOC_Os04g12090(LOC_Os04g12090.1) | INTRON |