Detailed information of SNP:
|
SNP ID:
sf0406656980(Gbrowse)
Chromosome: chr04 Position: 6656980 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 66.22% | 33.78% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 486 | 7.41% | 92.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 7.36% | 92.64% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406656980 | G->A | LOC_Os04g12110(LOC_Os04g12110.1) | Non-Synonymous SNP |