Detailed information of SNP:
|
SNP ID:
sf0406701852(Gbrowse)
Chromosome: chr04 Position: 6701852 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 98.51% | 1.49% |
| All Indica | 795 | 98.11% | 1.89% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406701852 | G->A | LOC_Os04g12170(LOC_Os04g12170.1) | Synonymous |