Detailed information of SNP:
|
SNP ID:
sf0406702463(Gbrowse)
Chromosome: chr04 Position: 6702463 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 89.19% | 10.81% |
| All Indica | 797 | 82.18% | 17.82% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406702463 | G->A | LOC_Os04g12170(LOC_Os04g12170.1) | INTRON |