Detailed information of SNP:
|
SNP ID:
sf0406703839(Gbrowse)
Chromosome: chr04 Position: 6703839 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 89.95% | 10.05% |
| All Indica | 795 | 83.14% | 16.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406703839 | C->T | LOC_Os04g12170(LOC_Os04g12170.1) | INTRON |