Detailed information of SNP:
|
SNP ID:
sf0406709248(Gbrowse)
Chromosome: chr04 Position: 6709248 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 65.72% | 34.28% |
| All Indica | 785 | 40.76% | 59.24% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 19.95% | 80.05% |
| Indica II | 209 | 54.07% | 45.93% |
| Indica Intermediate | 205 | 64.88% | 35.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406709248 | C->T | INTERGENIC | None |