Detailed information of SNP:
|
SNP ID:
sf0406711250(Gbrowse)
Chromosome: chr04 Position: 6711250 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 95.17% | 4.83% |
| All Indica | 767 | 91.66% | 8.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.29% | 2.71% |
| Indica II | 204 | 93.63% | 6.37% |
| Indica Intermediate | 194 | 78.87% | 21.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406711250 | C->G | LOC_Os04g12190(LOC_Os04g12190.1) | Non-Synonymous SNP |