Detailed information of SNP:
|
SNP ID:
sf0406715013(Gbrowse)
Chromosome: chr04 Position: 6715013 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 59.60% | 40.40% |
| All Indica | 795 | 94.72% | 5.28% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406715013 | C->T | LOC_Os04g12200(LOC_Os04g12200.1) | INTRON |