Detailed information of SNP:
|
SNP ID:
sf0406715346(Gbrowse)
Chromosome: chr04 Position: 6715346 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 60.30% | 39.70% |
| All Indica | 790 | 95.32% | 4.68% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 64 | 67.19% | 32.81% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406715346 | T->G | LOC_Os04g12200(LOC_Os04g12200.1) | INTRON |