Detailed information of SNP:
|
SNP ID:
sf0406723502(Gbrowse)
Chromosome: chr04 Position: 6723502 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 57.33% | 42.67% |
| All Indica | 779 | 89.35% | 10.65% |
| All Japonica | 495 | 3.84% | 96.16% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 367 | 89.65% | 10.35% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 200 | 89.50% | 10.50% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406723502 | C->T | LOC_Os04g12210(LOC_Os04g12210.1) | INTRON |