Detailed information of SNP:
|
SNP ID:
sf0406735618(Gbrowse)
Chromosome: chr04 Position: 6735618 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 94.36% | 5.64% |
| All Indica | 717 | 91.35% | 8.65% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 350 | 90.29% | 9.71% |
| Indica II | 184 | 92.93% | 7.07% |
| Indica Intermediate | 183 | 91.80% | 8.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406735618 | A->G | INTERGENIC | None |