Detailed information of SNP:
|
SNP ID:
sf0406753699(Gbrowse)
Chromosome: chr04 Position: 6753699 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 96.12% | 3.88% |
| All Indica | 749 | 94.53% | 5.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 356 | 94.10% | 5.90% |
| Indica II | 198 | 95.96% | 4.04% |
| Indica Intermediate | 195 | 93.85% | 6.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406753699 | T->C | LOC_Os04g12240(LOC_Os04g12240.1) | INTRON |