Detailed information of SNP:
|
SNP ID:
sf0406775127(Gbrowse)
Chromosome: chr04 Position: 6775127 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 93.77% | 6.23% |
| All Indica | 759 | 91.17% | 8.83% |
| All Japonica | 488 | 97.95% | 2.05% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 352 | 89.20% | 10.80% |
| Indica II | 203 | 91.63% | 8.37% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 329 | 98.48% | 1.52% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406775127 | A->G | INTERGENIC | None |