Detailed information of SNP:
|
SNP ID:
sf0406776786(Gbrowse)
Chromosome: chr04 Position: 6776786 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 59.27% | 40.73% |
| All Indica | 789 | 93.03% | 6.97% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 368 | 91.85% | 8.15% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406776786 | T->C | LOC_Os04g12280(LOC_Os04g12280.1) | INTRON |