Detailed information of SNP:
|
SNP ID:
sf0406778446(Gbrowse)
Chromosome: chr04 Position: 6778446 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 87.38% | 12.62% |
| All Indica | 790 | 81.14% | 18.86% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406778446 | G->T | INTERGENIC | None |