Detailed information of SNP:
|
SNP ID:
sf0406781236(Gbrowse)
Chromosome: chr04 Position: 6781236 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.94% | 11.06% |
| All Indica | 799 | 83.48% | 16.52% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406781236 | A->G | LOC_Os04g12290(LOC_Os04g12290.1) | Non-Synonymous SNP |