Detailed information of SNP:
|
SNP ID:
sf0406784947(Gbrowse)
Chromosome: chr04 Position: 6784947 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 70.10% | 29.90% |
| All Indica | 744 | 56.45% | 43.55% |
| All Japonica | 487 | 98.15% | 1.85% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 359 | 63.51% | 36.49% |
| Indica II | 196 | 45.41% | 54.59% |
| Indica Intermediate | 189 | 54.50% | 45.50% |
| Temperate Japonica | 326 | 98.47% | 1.53% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406784947 | T->A | INTERGENIC | None |