Detailed information of SNP:
|
SNP ID:
sf0406785696(Gbrowse)
Chromosome: chr04 Position: 6785696 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 85.73% | 14.27% |
| All Indica | 789 | 78.07% | 21.93% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 366 | 83.88% | 16.12% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406785696 | T->C | INTERGENIC | None |