Detailed information of SNP:
|
SNP ID:
sf0406786729(Gbrowse)
Chromosome: chr04 Position: 6786729 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 55.73% | 44.27% |
| All Indica | 788 | 85.28% | 14.72% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 367 | 80.93% | 19.07% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 334 | 4.19% | 95.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406786729 | T->C | LOC_Os04g12300(LOC_Os04g12300.1) | Synonymous |