Detailed information of SNP:
|
SNP ID:
sf0406787822(Gbrowse)
Chromosome: chr04 Position: 6787822 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 90.20% | 9.80% |
| All Indica | 762 | 91.99% | 8.01% |
| All Japonica | 494 | 85.83% | 14.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 96.39% | 3.61% |
| Indica II | 206 | 86.41% | 13.59% |
| Indica Intermediate | 196 | 89.80% | 10.20% |
| Temperate Japonica | 332 | 79.82% | 20.18% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406787822 | G->A | LOC_Os04g12310(LOC_Os04g12310.1) | Non-Synonymous SNP |