Detailed information of SNP:
|
SNP ID:
sf0406808177(Gbrowse)
Chromosome: chr04 Position: 6808177 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 93.18% | 6.82% |
| All Indica | 759 | 87.75% | 12.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 351 | 83.19% | 16.81% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 197 | 86.29% | 13.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406808177 | A->G | INTERGENIC | None |