Detailed information of SNP:
|
SNP ID:
sf0406808983(Gbrowse)
Chromosome: chr04 Position: 6808983 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 59.60% | 40.40% |
| All Indica | 782 | 91.69% | 8.31% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 89.07% | 10.93% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406808983 | A->G | LOC_Os04g12350(LOC_Os04g12350.1) | INTRON |