Detailed information of SNP:
|
SNP ID:
sf0406820575(Gbrowse)
Chromosome: chr04 Position: 6820575 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 95.33% | 4.67% |
| All Indica | 775 | 91.74% | 8.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 360 | 94.17% | 5.83% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406820575 | G->T | INTERGENIC | None |