Detailed information of SNP:
|
SNP ID:
sf0406824281(Gbrowse)
Chromosome: chr04 Position: 6824281 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 94.09% | 5.91% |
| All Indica | 758 | 91.16% | 8.84% |
| All Japonica | 490 | 97.96% | 2.04% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 202 | 95.05% | 4.95% |
| Indica Intermediate | 187 | 79.14% | 20.86% |
| Temperate Japonica | 332 | 97.29% | 2.71% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406824281 | G->A | INTERGENIC | None |