Detailed information of SNP:
|
SNP ID:
sf0406828643(Gbrowse)
Chromosome: chr04 Position: 6828643 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.29% | 10.71% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406828643 | A->T | INTERGENIC | None |