Detailed information of SNP:
|
SNP ID:
sf0406830912(Gbrowse)
Chromosome: chr04 Position: 6830912 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 50.71% | 49.29% |
| All Indica | 789 | 79.09% | 20.91% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 90.54% | 9.46% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 208 | 57.69% | 42.31% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406830912 | T->A | LOC_Os04g12390(LOC_Os04g12390.1) | INTRON |