Detailed information of SNP:
|
SNP ID:
sf0406831222(Gbrowse)
Chromosome: chr04 Position: 6831222 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 51.14% | 48.86% |
| All Indica | 785 | 79.62% | 20.38% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 90.81% | 9.19% |
| Indica II | 208 | 80.77% | 19.23% |
| Indica Intermediate | 207 | 58.45% | 41.55% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406831222 | A->C | LOC_Os04g12390(LOC_Os04g12390.1) | INTRON |