Detailed information of SNP:
|
SNP ID:
sf0406833168(Gbrowse)
Chromosome: chr04 Position: 6833168 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 64.64% | 35.36% |
| All Indica | 783 | 38.83% | 61.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 369 | 14.63% | 85.37% |
| Indica II | 209 | 56.94% | 43.06% |
| Indica Intermediate | 205 | 63.90% | 36.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406833168 | T->C | LOC_Os04g12390(LOC_Os04g12390.1) | INTRON |