Detailed information of SNP:
|
SNP ID:
sf0406833478(Gbrowse)
Chromosome: chr04 Position: 6833478 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 50.25% | 49.75% |
| All Indica | 781 | 26.25% | 73.75% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 369 | 14.63% | 85.37% |
| Indica II | 206 | 24.76% | 75.24% |
| Indica Intermediate | 206 | 48.54% | 51.46% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406833478 | C->T | LOC_Os04g12390(LOC_Os04g12390.1) | Non-Synonymous SNP |