Detailed information of SNP:
|
SNP ID:
sf0406845296(Gbrowse)
Chromosome: chr04 Position: 6845296 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 50.39% | 49.61% |
| All Indica | 784 | 26.40% | 73.60% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 371 | 14.82% | 85.18% |
| Indica II | 208 | 24.52% | 75.48% |
| Indica Intermediate | 205 | 49.27% | 50.73% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406845296 | T->C | INTERGENIC | None |