Detailed information of SNP:
|
SNP ID:
sf0406846118(Gbrowse)
Chromosome: chr04 Position: 6846118 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 57.83% | 42.17% |
| All Indica | 783 | 92.46% | 7.54% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 368 | 94.29% | 5.71% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406846118 | C->T | INTERGENIC | None |