Detailed information of SNP:
|
SNP ID:
sf0406849391(Gbrowse)
Chromosome: chr04 Position: 6849391 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 52.23% | 47.77% |
| All Indica | 788 | 79.31% | 20.69% |
| All Japonica | 483 | 1.86% | 98.14% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 209 | 80.86% | 19.14% |
| Indica Intermediate | 205 | 59.02% | 40.98% |
| Temperate Japonica | 327 | 1.53% | 98.47% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 63 | 1.59% | 98.41% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406849391 | T->C | LOC_Os04g12410(LOC_Os04g12410.1) | Non-Synonymous SNP |