Detailed information of SNP:
|
SNP ID:
sf0406849477(Gbrowse)
Chromosome: chr04 Position: 6849477 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 50.57% | 49.43% |
| All Indica | 779 | 76.25% | 23.75% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 87.06% | 12.94% |
| Indica II | 207 | 77.29% | 22.71% |
| Indica Intermediate | 201 | 55.22% | 44.78% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406849477 | G->A | LOC_Os04g12410(LOC_Os04g12410.1) | Non-Synonymous SNP |