Detailed information of SNP:
|
SNP ID:
sf0406850418(Gbrowse)
Chromosome: chr04 Position: 6850418 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 59.13% | 40.87% |
| All Indica | 774 | 35.27% | 64.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 27.87% | 72.13% |
| Indica I | 362 | 22.65% | 77.35% |
| Indica II | 206 | 36.41% | 63.59% |
| Indica Intermediate | 206 | 56.31% | 43.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406850418 | C->T | INTERGENIC | None |